View source: R/metacells_cluster.R
metacells_cluster | R Documentation |
Metacells by clustering within communities.
metacells_cluster( groups.df, ge_df, metacell_size, nb_cores = 1, hclust_method = "ward.D" )
groups.df |
the filtered data.frame with community information |
ge_df |
normalized gene expression of all cells (e.g. output from
|
metacell_size |
the number of cells in a metacell. |
nb_cores |
the number of processor to use. |
hclust_method |
the 'method' used when clustering (see hclust). |
a list with
cells.tm |
a list with cell names for each metacell. |
cells.info |
a data.frame recording the community of origina for each metacell. |
Jean Monlong
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