plot_heatmap: Heatmap of the CNA scores
In jmonlong/scCNAutils: Functions to analyze copy number aberrations in single-cell data
plot_heatmap R Documentation
Heatmap of the CNA scores
Description
Heatmap of the CNA scores
Usage
plot_heatmap(
z_df,
cells_df = NULL,
nb_subsamp = 1000,
hc.method = "ward.D",
z_win = 3
)
Arguments
z_df
the data.frame with Z-scores.
cells_df
a data.frame with cell information.
nb_subsamp
the number of cells to sub-sample. Default is 1000.
hc.method
the hierarchical clustering method to order cells.
z_win
threshold to winsorized Z scores in the color scale.
Value
a list of ggplot2 objects.
Author(s)
Jean Monlong
jmonlong/scCNAutils documentation built on May 3, 2022, 4:34 a.m.
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| plot_heatmap | R Documentation |
Heatmap of the CNA scores
Description
Heatmap of the CNA scores
Usage
plot_heatmap( z_df, cells_df = NULL, nb_subsamp = 1000, hc.method = "ward.D", z_win = 3 )
Arguments
z_df |
the data.frame with Z-scores. |
cells_df |
a data.frame with cell information. |
nb_subsamp |
the number of cells to sub-sample. Default is 1000. |
hc.method |
the hierarchical clustering method to order cells. |
z_win |
threshold to winsorized Z scores in the color scale. |
Value
a list of ggplot2 objects.
Author(s)
Jean Monlong
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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