annotate_cna_seg: Annotate CN segments
In jmonlong/scCNAutils: Functions to analyze copy number aberrations in single-cell data
View source: R/annotate_cna_seg.R
annotate_cna_seg R Documentation
Annotate CN segments
Description
Annotate the CN segment predicted by the HMM. The signal in the segment is compared
to the signal in "neutral" segments nearby using a Wilcoxon test.
Usage
annotate_cna_seg(seg.df, hmm.df)
Arguments
seg.df
a data.frame with segment information
hmm.df
a data.frame with bin information
Value
an annotated version of seg.df with a column wt.pv wit the pvalue of the
Wilcoxon test.
Author(s)
Jean Monlong
jmonlong/scCNAutils documentation built on May 3, 2022, 4:34 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/annotate_cna_seg.R
| annotate_cna_seg | R Documentation |
Annotate CN segments
Description
Annotate the CN segment predicted by the HMM. The signal in the segment is compared to the signal in "neutral" segments nearby using a Wilcoxon test.
Usage
annotate_cna_seg(seg.df, hmm.df)
Arguments
seg.df |
a data.frame with segment information |
hmm.df |
a data.frame with bin information |
Value
an annotated version of seg.df with a column wt.pv wit the pvalue of the Wilcoxon test.
Author(s)
Jean Monlong
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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