annotate_cna_seg: Annotate CN segments

Description Usage Arguments Value Author(s)

View source: R/annotate_cna_seg.R

Description

Annotate the CN segment predicted by the HMM. The signal in the segment is compared to the signal in "neutral" segments nearby using a Wilcoxon test.

Usage

1
annotate_cna_seg(seg.df, hmm.df)

Arguments

seg.df

a data.frame with segment information

hmm.df

a data.frame with bin information

Value

an annotated version of seg.df with a column wt.pv wit the pvalue of the Wilcoxon test.

Author(s)

Jean Monlong


jmonlong/scCNAutils documentation built on Nov. 23, 2019, 2:14 a.m.