zscore: Compute Z-score
In jmonlong/scCNAutils: Functions to analyze copy number aberrations in single-cell data
zscore R Documentation
Compute Z-score
Description
Transform gene expression into a scaled score, either using all cells or a
subset of cells as baseline.
Usage
zscore(ge_df, wins_th = 3, method = c("z", "norm"), normals = NULL)
Arguments
ge_df
the input expression data.frame
wins_th
the threshold to winsorize Z-score. Default is 3
method
the normalization method. Either 'z' or norm'.
normals
the cells to use as normals. If NULL (default) all cells are used
as normals
Value
a data.frame with Z-scores.
Author(s)
Jean Monlong
jmonlong/scCNAutils documentation built on May 3, 2022, 4:34 a.m.
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| zscore | R Documentation |
Compute Z-score
Description
Transform gene expression into a scaled score, either using all cells or a subset of cells as baseline.
Usage
zscore(ge_df, wins_th = 3, method = c("z", "norm"), normals = NULL)
Arguments
ge_df |
the input expression data.frame |
wins_th |
the threshold to winsorize Z-score. Default is 3 |
method |
the normalization method. Either 'z' or norm'. |
normals |
the cells to use as normals. If NULL (default) all cells are used as normals |
Value
a data.frame with Z-scores.
Author(s)
Jean Monlong
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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