read_mtx | R Documentation |
Read a trio of genes, barcodes and mtx files.
read_mtx( mtx_file = "matrix.mtx", genes_file = "genes.tsv", barcodes_file = "barcodes.tsv", path = ".", rm_dup = TRUE, genes_col = 2, min_barcode_exp = 1, filter_zero_genes = TRUE )
mtx_file |
the path to the mtx file |
genes_file |
the path to the genes file. |
barcodes_file |
the path to the barcodes file |
path |
the path to the folder containing the files |
rm_dup |
remove duplicated gene names? Default is TRUE. |
genes_col |
the column to use in genes_file. Default is 2. |
min_barcode_exp |
minimum total expression in barcodes/cells. Default is 1. |
filter_zero_genes |
filter genes with no reads in any cells? Default is TRUE. |
a data.frame with a 'symbol' column with gene names and one column per barcode.
Jean Monlong
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