array_RemoveBatch2: Adjust for batch effects using limma removeBatchEffect
In kauralasoo/eQTLUtils:
View source: R/array_qc_utils.R
array_RemoveBatch2 R Documentation
Adjust for batch effects using limma removeBatchEffect
Description
Adjust for batch effects using limma removeBatchEffect
Usage
array_RemoveBatch2(se, assay_name = "norm_exprs")
Arguments
se
SummarizedExperiment file to be analysed
assay_name
Assay name to be analysed (exprs, norm_exprs or batch_exprs)
Value
Batch effect adjusted SE with new assay called batch_exprs
Author(s)
Liis Kolberg
kauralasoo/eQTLUtils documentation built on March 12, 2023, 8:50 p.m.
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View source: R/array_qc_utils.R
| array_RemoveBatch2 | R Documentation |
Adjust for batch effects using limma removeBatchEffect
Description
Adjust for batch effects using limma removeBatchEffect
Usage
array_RemoveBatch2(se, assay_name = "norm_exprs")
Arguments
se |
SummarizedExperiment file to be analysed |
assay_name |
Assay name to be analysed (exprs, norm_exprs or batch_exprs) |
Value
Batch effect adjusted SE with new assay called batch_exprs
Author(s)
Liis Kolberg
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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