filterSummarizedExperiment: Filter a Summarized Experiment according to provided...

In kauralasoo/eQTLUtils:

Filter a Summarized Experiment according to provided parameters

Description

Filter a Summarized Experiment according to provided parameters

Usage

filterSummarizedExperiment(
  se,
  valid_chromosomes = NA,
  valid_gene_types = NA,
  filter_rna_qc = FALSE,
  filter_genotype_qc = FALSE
)

Arguments

se	Summarized Experiment object to be filteres
valid_chromosomes	list (string vector) of valid gene chromosomes
valid_gene_types	list (string vector) of valid gene types
filter_rna_qc	Boolean value
filter_genotype_qc	Boolean value

Author(s)

Kaur Alasoo

kauralasoo/eQTLUtils documentation built on March 12, 2023, 8:50 p.m.