generate_distance_matrix: Generate distance matrix of genotype samples using PC...

In kauralasoo/eQTLUtils:

Generate distance matrix of genotype samples using PC matrices

Description

Generate distance matrix of genotype samples using PC matrices

Usage

generate_distance_matrix(
  reference_pca_df,
  pca_df,
  n_pcs = 3,
  method = "euclidean"
)

Arguments

reference_pca_df	PC matrix of reference genotype data. Should have genotype_id, superpopulation_code and PCN columns
pca_df	PC matrix of input genotype data. Should have genotype_id, superpopulation_code and PCN columns
n_pcs	number of PCs to be taken into account. Default value is 3
method	Method of distance measure. See stats::dist() method for options

Author(s)

Nurlan Kerimov

kauralasoo/eQTLUtils documentation built on March 12, 2023, 8:50 p.m.