API for kauralasoo/eQTLUtils

Global functions
array_Boxplot Man page Source code
array_CalculateSexQCDataFrame Man page Source code
array_PlotMDS Man page Source code
array_PlotSexQC Man page Source code
array_RemoveBatch Man page Source code
array_filterSE_gene_types Source code
array_normaliseSE Man page Source code
array_plotPCA Man page Source code
calculateMDSMatrix Man page Source code
calculateMean Source code
calculatePCAMatrix Man page Source code
calculateSexQCDataFrame Man page Source code
calculateTranscriptRatios Source code
checkCisVariants Man page Source code
constructTxreviseRowData Source code
convertSEtoQTLtools Man page Source code
extractPhenotypeData Source code
extractPhentypeFromSE Source code
extractVariantGenotypeFromGDS Source code
filterSE_gene_types Source code
filterSummarizedExperiment Source code
importBiomartMetadata Source code
importQTLtoolsPCA Source code
importQTLtoolsTable Man page Source code
importVariantInformation Man page Source code
importVariantInformationFromGDS Source code
log2_transform Man page Source code
makeFeatureCountsSummarizedExperiemnt Source code
makeSummarizedExperiment Source code
mbvFindBestMatch Man page Source code
mergeCountsSEs Source code
normaliseSE_cqn Source code
normaliseSE_quantile Man page Source code
normaliseSE_ratios Source code
normaliseSE_tpm Source code
plotMDSAnalysis Man page Source code
plotPCAAnalysis Man page Source code
plotSexQC Man page Source code
qtltoolsTabixFetchPhenotypes Man page Source code
quantileNormaliseCols Source code
quantileNormaliseMatrix Source code
quantileNormaliseRows Source code
quantileNormaliseVector Man page Source code
removeGeneVersion Source code
replaceNAsWithRowMeans Source code
saveQTLToolsMatrices Man page Source code
scanTabixDataFrame Man page Source code
studySEtoQTLTools Source code
subsetSEByColumnValue Man page Source code
transformSE_PCA Source code
zScoreNormalize Source code
kauralasoo/eQTLUtils documentation built on Nov. 28, 2018, 4:14 p.m.