checkCisVariants: Remove phenotypes from SummarizedExperiments that do not have...
In kauralasoo/eQTLUtils:
View source: R/SummarizedExperiment_helpers.R
checkCisVariants R Documentation
Remove phenotypes from SummarizedExperiments that do not have cis genotypes
Description
Remove phenotypes from SummarizedExperiments that do not have cis genotypes
Usage
checkCisVariants(
se,
variant_information,
cis_distance = 1e+06,
min_cis_variant = 5
)
Arguments
se
SummarizedExperiment object
variant_information
Minimal number of variants in cis before the phenotype is removed.
Value
filtered SummarizedExperiment object where phenotypes with no cis variants are removed.
kauralasoo/eQTLUtils documentation built on March 12, 2023, 8:50 p.m.
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View source: R/SummarizedExperiment_helpers.R
| checkCisVariants | R Documentation |
Remove phenotypes from SummarizedExperiments that do not have cis genotypes
Description
Remove phenotypes from SummarizedExperiments that do not have cis genotypes
Usage
checkCisVariants( se, variant_information, cis_distance = 1e+06, min_cis_variant = 5 )
Arguments
se |
SummarizedExperiment object |
variant_information |
Minimal number of variants in cis before the phenotype is removed. |
Value
filtered SummarizedExperiment object where phenotypes with no cis variants are removed.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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