qtltoolsPrepareSE: Normalise phenotype SummarisedExperiment object for QTL...
In kauralasoo/eQTLUtils:
View source: R/qtltools_normalisation_wrappers.R
qtltoolsPrepareSE R Documentation
Normalise phenotype SummarisedExperiment object for QTL mapping with QTLtools
Description
Normalise phenotype SummarisedExperiment object for QTL mapping with QTLtools
Usage
qtltoolsPrepareSE(
se,
quant_method,
filter_rna_qc = TRUE,
filter_genotype_qc = TRUE,
keep_XY = FALSE
)
Arguments
se
SummarizedExperiment object used for QTL mapping
quant_method
Quantification method used to generate the data. Valid options are: featureCounts, array, leafcutter
Value
Normalised SummarizedExperiment object
kauralasoo/eQTLUtils documentation built on March 12, 2023, 8:50 p.m.
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View source: R/qtltools_normalisation_wrappers.R
| qtltoolsPrepareSE | R Documentation |
Normalise phenotype SummarisedExperiment object for QTL mapping with QTLtools
Description
Normalise phenotype SummarisedExperiment object for QTL mapping with QTLtools
Usage
qtltoolsPrepareSE( se, quant_method, filter_rna_qc = TRUE, filter_genotype_qc = TRUE, keep_XY = FALSE )
Arguments
se |
SummarizedExperiment object used for QTL mapping |
quant_method |
Quantification method used to generate the data. Valid options are: featureCounts, array, leafcutter |
Value
Normalised SummarizedExperiment object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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