extractGenotypeMatrixFromDosage: Extract genotype matrix from a dosage file generated by...
In kauralasoo/eQTLUtils:
View source: R/genotype_dose_matrix.R
extractGenotypeMatrixFromDosage R Documentation
Extract genotype matrix from a dosage file generated by bcftools
Description
Extract genotype matrix from a dosage file generated by bcftools
Usage
extractGenotypeMatrixFromDosage(chr, start, end, dosage_file)
Arguments
chr
chromosome of the genomic region
start
start coordinate of the genomic region
end
end coordinate of the genomic region
dosage_file
Path to the tabix-indexed dosage file (first four columns need to be CHROM, POS, REF, ALT)
Value
genotype matrix
kauralasoo/eQTLUtils documentation built on March 12, 2023, 8:50 p.m.
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View source: R/genotype_dose_matrix.R
| extractGenotypeMatrixFromDosage | R Documentation |
Extract genotype matrix from a dosage file generated by bcftools
Description
Extract genotype matrix from a dosage file generated by bcftools
Usage
extractGenotypeMatrixFromDosage(chr, start, end, dosage_file)
Arguments
chr |
chromosome of the genomic region |
start |
start coordinate of the genomic region |
end |
end coordinate of the genomic region |
dosage_file |
Path to the tabix-indexed dosage file (first four columns need to be CHROM, POS, REF, ALT) |
Value
genotype matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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