View source: R/array_qc_utils.R
array_plotPCA | R Documentation |
Generate PCA QC Plot
array_plotPCA( se, assay_name = "exprs", filter_quality = TRUE, show_quality = FALSE, html_output = FALSE, output_dir = "./" )
se |
SummarizedExperiment file to be analysed |
assay_name |
Assay name to be analysed (exprs, norm_exprs or batch_exprs) |
filter_quality |
Boolean value if samples with RNA_QC_passed = FALSE should be excluded (Default:TRUE) |
show_quality |
Boolean value if samples with RNA_QC_passed = FALSE should be highlighted (Default:FALSE) |
html_output |
Boolean value if html output should be created (Default:FALSE) |
output_dir |
html file output dir, if html_output is TRUE (Default:current directory) |
PCA plot of study
Liis Kolberg
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