studySEtoCountMatrices: Split study SummarizedExperiment object into invidiual input...

In kauralasoo/eQTLUtils:

Split study SummarizedExperiment object into invidiual input files for QTLTools.

Description

Uses the qtl_group metadata column (required) to split a single SummarizedExperiment object into multiple independent input files for QTLTools. Write the files directly to disk.

Usage

studySEtoCountMatrices(
  se,
  assay_name,
  out_dir,
  study_name = NULL,
  quantile_tpms = NULL,
  tpm_thres = 0.1
)

Arguments

se	SummarizedExperiment object.
assay_name	Name of the assay in the SummarizedExperiment object used for QTL mapping.
out_dir	Path to the output directory where the QTLTools input files will be written.
study_name	Custom study_name character string to safe files with prefix

Value

None

kauralasoo/eQTLUtils documentation built on March 12, 2023, 8:50 p.m.