studySEtoCountMatrices | R Documentation |
Uses the qtl_group metadata column (required) to split a single SummarizedExperiment object into multiple independent input files for QTLTools. Write the files directly to disk.
studySEtoCountMatrices( se, assay_name, out_dir, study_name = NULL, quantile_tpms = NULL, tpm_thres = 0.1 )
se |
SummarizedExperiment object. |
assay_name |
Name of the assay in the SummarizedExperiment object used for QTL mapping. |
out_dir |
Path to the output directory where the QTLTools input files will be written. |
study_name |
Custom study_name character string to safe files with prefix |
None
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