studySEtoQTLTools: Split study SummarizedExperiment object into invidiual input...
In kauralasoo/eQTLUtils:
studySEtoQTLTools R Documentation
Split study SummarizedExperiment object into invidiual input files for QTLTools.
Description
Uses the qtl_group metadata column (required) to split a single SummarizedExperiment
object into multiple independent input files for QTLTools. Write the files directly to disk.
Usage
studySEtoQTLTools(se, assay_name, out_dir, extra_qtl_group = NULL)
Arguments
se
SummarizedExperiment object.
assay_name
Name of the assay in the SummarizedExperiment object used for QTL mapping.
out_dir
Path to the output directory where the QTLTools input files will be written.
extra_qtl_group
Used to split the datasets using some additional metadata column in additon
to the qtl_group column. This can for example be used to perform sex-specific or population-specific
eQTL analysis.
Value
None
kauralasoo/eQTLUtils documentation built on March 12, 2023, 8:50 p.m.
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| studySEtoQTLTools | R Documentation |
Split study SummarizedExperiment object into invidiual input files for QTLTools.
Description
Uses the qtl_group metadata column (required) to split a single SummarizedExperiment object into multiple independent input files for QTLTools. Write the files directly to disk.
Usage
studySEtoQTLTools(se, assay_name, out_dir, extra_qtl_group = NULL)
Arguments
se |
SummarizedExperiment object. |
assay_name |
Name of the assay in the SummarizedExperiment object used for QTL mapping. |
out_dir |
Path to the output directory where the QTLTools input files will be written. |
extra_qtl_group |
Used to split the datasets using some additional metadata column in additon to the qtl_group column. This can for example be used to perform sex-specific or population-specific eQTL analysis. |
Value
None
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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