transformSE_PCA: Quantile normalise SummarizedExperiment by rows
In kauralasoo/eQTLUtils:
View source: R/SummarizedExperiment_helpers.R
transformSE_PCA R Documentation
Quantile normalise SummarizedExperiment by rows
Description
Quantile normalise SummarizedExperiment by rows
Usage
transformSE_PCA(
se,
assay_name = "cqn",
n_pcs = NULL,
log_transform = FALSE,
column_prefix = "",
feature_id = "sample_id",
...
)
Arguments
se
SummarizedExperiment object
assay_name
Name of the assay to be processed in the se object
n_pcs
Number of desired principal components
log_transform
Boolean value
column_prefix
custom column_prefix
feature_id
default: sample_id
Value
SummarizedExperiment object with quantile-normalised data in the qnorm assay
kauralasoo/eQTLUtils documentation built on March 12, 2023, 8:50 p.m.
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View source: R/SummarizedExperiment_helpers.R
| transformSE_PCA | R Documentation |
Quantile normalise SummarizedExperiment by rows
Description
Quantile normalise SummarizedExperiment by rows
Usage
transformSE_PCA( se, assay_name = "cqn", n_pcs = NULL, log_transform = FALSE, column_prefix = "", feature_id = "sample_id", ... )
Arguments
se |
SummarizedExperiment object |
assay_name |
Name of the assay to be processed in the se object |
n_pcs |
Number of desired principal components |
log_transform |
Boolean value |
column_prefix |
custom column_prefix |
feature_id |
default: sample_id |
Value
SummarizedExperiment object with quantile-normalised data in the qnorm assay
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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