addOverlappingPeaks: Add overlapping ATAC peaks to a credible set of QTL variants
In kauralasoo/seqUtils:
Description
Usage
Arguments
Value
View source: R/qtl_classify_peaks.R
Description
Add overlapping ATAC peaks to a credible set of QTL variants
Usage
1
addOverlappingPeaks(qtl_credible_set, atac_peak_metadata, extend = 0)
Arguments
qtl_credible_set
Data frame with credible set of QTL variants
(columns: snp_id, chr, pos)
atac_peak_metadata
Data frame of start end coordinates of ATAC peaks
(columns: gene_id, chr, start, end, strand)
extend
Number of bp added to peak start and end coordinates to increase the chance of finding an overlap.
Value
Modifed qtl_credible_set data frame with added overlap_peak_id column.
kauralasoo/seqUtils documentation built on May 20, 2019, 7:42 a.m.
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Description Usage Arguments Value
View source: R/qtl_classify_peaks.R
Description
Add overlapping ATAC peaks to a credible set of QTL variants
Usage
1 | addOverlappingPeaks(qtl_credible_set, atac_peak_metadata, extend = 0)
|
Arguments
qtl_credible_set |
Data frame with credible set of QTL variants (columns: snp_id, chr, pos) |
atac_peak_metadata |
Data frame of start end coordinates of ATAC peaks (columns: gene_id, chr, start, end, strand) |
extend |
Number of bp added to peak start and end coordinates to increase the chance of finding an overlap. |
Value
Modifed qtl_credible_set data frame with added overlap_peak_id column.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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