findMinimalSnpPvalues: Find SNP with minimal p-value per gene.
In kauralasoo/seqUtils:
Description
Usage
Arguments
Value
Description
Group QTL matrix by gene, sort by p_nominal, keep SNP with smalles p-value,
Correct that using bonferroni correction and then apply FDR correction across genes.
Usage
1
findMinimalSnpPvalues(qtl_df)
Arguments
qtl_df
Data frame with QTL mapping results
(required columns: gene_id, p_nominal, n_cis_snps)
Value
Only gene-SNP pairs with minimal p-values,
added columns: p_bonferroni, p_fdr.
kauralasoo/seqUtils documentation built on May 20, 2019, 7:42 a.m.
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Description Usage Arguments Value
Description
Group QTL matrix by gene, sort by p_nominal, keep SNP with smalles p-value, Correct that using bonferroni correction and then apply FDR correction across genes.
Usage
1 | findMinimalSnpPvalues(qtl_df)
|
Arguments
qtl_df |
Data frame with QTL mapping results (required columns: gene_id, p_nominal, n_cis_snps) |
Value
Only gene-SNP pairs with minimal p-values, added columns: p_bonferroni, p_fdr.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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