Description Usage Arguments Value
Group QTL matrix by gene, sort by p_nominal, keep SNP with smalles p-value, Correct that using bonferroni correction and then apply FDR correction across genes.
1 | findMinimalSnpPvalues(qtl_df)
|
qtl_df |
Data frame with QTL mapping results (required columns: gene_id, p_nominal, n_cis_snps) |
Only gene-SNP pairs with minimal p-values, added columns: p_bonferroni, p_fdr.
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