importGwasCatalog: Import EBI GWAS catalog into R.

Description Usage Arguments Value Author(s)

View source: R/annot_gwas.R

Description

Imports tsv version of the GWAS catalog into R. Parses total sample size from the INITIAL SAMPLE DESCRIPTION field and also flags each study that contains European samples.

Usage

1

Arguments

path

Path to the EBI GWAS catalog export file (must contain MAPPED_TRAIT field as well).

Value

data frame containing the gwas catalog.

Author(s)

Kaur Alasoo


kauralasoo/seqUtils documentation built on Sept. 24, 2018, 1:11 a.m.