fimoRelativeEnrichment: Calculate relative motif enrichment in foreground set of...

In kauralasoo/seqUtils:

Description

Calculate relative motif enrichment in foreground set of peaks compared to a specifed background.

Usage

fimoRelativeEnrichment(foreground, background = NULL, fimo_hits,
  peak_metadata)

Arguments

foreground	Data frame of foreground peaks, should be a subset of background peaks.
background	Data frame of background peaks (deafult: NULL). If NULL then uses all peaks in peak_metadata.
fimo_hits	Data frame containg all FIMO motif matches in all peaks.
peak_metadata	Data frame with peak start and end coordinates.

Value

Data frame with relative enrichment of each motif inf the foreground set compared to the background set.

kauralasoo/seqUtils documentation built on May 20, 2019, 7:42 a.m.