Description Usage Arguments Value
Calculate relative motif enrichment in foreground set of peaks compared to a specifed background.
1 2 | fimoRelativeEnrichment(foreground, background = NULL, fimo_hits,
peak_metadata)
|
foreground |
Data frame of foreground peaks, should be a subset of background peaks. |
background |
Data frame of background peaks (deafult: NULL). If NULL then uses all peaks in peak_metadata. |
fimo_hits |
Data frame containg all FIMO motif matches in all peaks. |
peak_metadata |
Data frame with peak start and end coordinates. |
Data frame with relative enrichment of each motif inf the foreground set compared to the background set.
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