filterOverlaps: Filter peak calls based on how many other samples they are...
In kauralasoo/seqUtils:
Description
Usage
Arguments
Value
Author(s)
View source: R/annot_processPeaks.R
Description
For each set of peak calls, find the ones that are present in at least minOverlapCount samples.
Usage
1
filterOverlaps(peak_list, minOverlapCount = 3)
Arguments
peak_list
list of GRanges objects corresponding to peak calls.
minOverlapCount
Minimal number of samples the peak has to be present to be retained.
Value
List of GRanges objects corresponding to filtered peak calls from each sample, only peaks
that were present in minOverlapCount samples are retained.
Author(s)
Kaur Alasoo
kauralasoo/seqUtils documentation built on May 20, 2019, 7:42 a.m.
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Description Usage Arguments Value Author(s)
View source: R/annot_processPeaks.R
Description
For each set of peak calls, find the ones that are present in at least minOverlapCount samples.
Usage
1 | filterOverlaps(peak_list, minOverlapCount = 3)
|
Arguments
peak_list |
list of GRanges objects corresponding to peak calls. |
minOverlapCount |
Minimal number of samples the peak has to be present to be retained. |
Value
List of GRanges objects corresponding to filtered peak calls from each sample, only peaks that were present in minOverlapCount samples are retained.
Author(s)
Kaur Alasoo
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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