Files in kauralasoo/seqUtils

.gitignore
DESCRIPTION
NAMESPACE
R/DRIMseq.R R/VarCompFunctions.R R/annot_gwas.R R/annot_processGeneAnnotations.R R/annot_processPeaks.R R/counts_ASE.R R/counts_makePlots.R R/differential_expression.R R/expression_list_functions.R R/genericFunctions.R R/import_data.R R/matrix_munging.R R/motif_enrichment.R R/qtl_FINEMAP.R R/qtl_GARFIELD.R R/qtl_PEER.R R/qtl_QTLTools.R R/qtl_classify_peaks.R R/qtl_coloc.R R/qtl_eigenMT.R R/qtl_fastqtl.R R/qtl_finemapping.R R/qtl_leafcutter.R R/qtl_makePlots.R R/qtl_matrixEQTL.R R/qtl_postProcess.R R/qtl_process_coloc.R R/qtl_rasqual.R R/qtl_rasqual_effects.R R/qtl_test_interactions.R R/qtl_visualise_trQTLs.R man/addAssociationPosterior.Rd man/addExpectedPvalue.Rd man/addOverlappingPeaks.Rd man/addR2FromLead.Rd man/annotateCredibleSet.Rd man/aseDataAddGenotypes.Rd man/calculateCQN.Rd man/calculateEnrichment.Rd man/calculatePairwisePi1.Rd man/calculatePeakDistance.Rd man/calculatePermutationPvalues.Rd man/calculatePi1.Rd man/calculateTPM.Rd man/censorLog2OR.Rd man/colocMolecularQTLs.Rd man/colocMolecularQTLsByRow.Rd man/colocQtlGWAS.Rd man/conditionPalette.Rd man/constructCredibleSet.Rd man/constructFastQTLGenePos.Rd man/constructGeneData.Rd man/constructGenotypeText.Rd man/constructMatrixEQTLCovariates.Rd man/constructMatrixEQTLGenePos.Rd man/constructQTLtoolsGenePos.Rd man/constructVariantRanges.Rd man/credibleSetPeakOverlaps.Rd man/dataFrameToGRanges.Rd man/eigenMTExportGenotypes.Rd man/eigenMTExportGenotypesByChr.Rd man/eigenMTImportResults.Rd man/estimateVarianceExplained.Rd man/exportDataForRasqual.Rd man/extractConditionFromExpressionList.Rd man/extractConditionFromSummarizedExperiment.Rd man/extractGenesFromExpressionList.Rd man/extractQTLsFromList.Rd man/fastqtlTabixFetchGenes.Rd man/fastqtlTabixFetchSNPs.Rd man/filterHitsR2.Rd man/filterInteractionResults.Rd man/filterOverlaps.Rd man/fimoRelativeEnrichment.Rd man/findGWASOverlaps.Rd man/findMinimalSnpPvalues.Rd man/gdsToMatrix.Rd man/getFDR.Rd man/identifyAmbiguousMasters.Rd man/importCredibleSets.Rd man/importFastQTLTable.Rd man/importGWASSummary.Rd man/importGwasCatalog.Rd man/importQTLtoolsTable.Rd man/importRasqualTable.Rd man/importVariantInformation.Rd man/loadBroadPeaks.Rd man/loadCounts.Rd man/loadFragmentLengths.Rd man/loadNarrowPeaks.Rd man/makeMultiplePlots.Rd man/makeUnionPeaks.Rd man/matrixeqtlTestInteraction.Rd man/pToZ.Rd man/plotEQTL.Rd man/prefilterColocCandidates.Rd man/prepareFastqtlMatrix.Rd man/prepareQTLtoolsMatrix.Rd man/qtltoolsTabixFetchPhenotypes.Rd man/quantifyMotifDisruption.Rd man/quantifyMultipleMotifs.Rd man/quantifyMultipleVariants.Rd man/quantileNormaliseVector.Rd man/rankAtacSummaries.Rd man/runMatrixEQTL.Rd man/saveFastqtlMatrices.Rd man/savePEERData.Rd man/savePlots.Rd man/scanTabixDataFrame.Rd man/splitIntoBatches.Rd man/subsampleFisherTest.Rd man/tabixFetchGWASSummary.Rd man/tbl_df2.Rd man/testColoc.Rd man/testInteraction.Rd man/testInteractionLme4.Rd man/testThreewayInteraction.Rd man/tibbleToNamedMatrix.Rd man/tidyGenotypeMatrix.Rd man/tidyVector.Rd man/varianceExplained.Rd man/wiggleplotrConstructMetadata.Rd man/zToLD.Rd tutorials/download_annotations.Rmd tutorials/download_annotations.md
kauralasoo/seqUtils documentation built on Oct. 31, 2017, 11:36 p.m.