The variant information text file can be generated from the VCF using the following bcftools command: bcftools query -f '%CHROM\t%POS\t%ID\t%REF\t%ALT\t%TYPE\t%AC\t%AN\n' path/to/vcf_file.vcf.gz | bgzip > path/to/variant_infromation_file.txt.gz
1 | importVariantInformation(path)
|
path |
Path to the the variant information text file. |
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