filterHitsR2: Filter SNPs based on R2
In kauralasoo/seqUtils:
Description
Usage
Arguments
Value
View source: R/qtl_postProcess.R
Description
Identify genes that have two different lead SNPs and remove one of them if
the R2 between the two SNPs is greater than R2_thresh.
Usage
1
filterHitsR2(feature_snp_pairs, genotypes, R2_thresh = 0.8)
Arguments
feature_snp_pairs
Data frame with two columns: gene_id, snp_id.
genotypes
Genotype matrix (SNPs in rows, samples in columns)
R2_thresh
R2 threshold, default 0.8.
Value
Filtered feature_snp_pairs that does not cotain highly correlated SNPs for single feature.
kauralasoo/seqUtils documentation built on May 20, 2019, 7:42 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
View source: R/qtl_postProcess.R
Description
Identify genes that have two different lead SNPs and remove one of them if the R2 between the two SNPs is greater than R2_thresh.
Usage
1 | filterHitsR2(feature_snp_pairs, genotypes, R2_thresh = 0.8)
|
Arguments
feature_snp_pairs |
Data frame with two columns: gene_id, snp_id. |
genotypes |
Genotype matrix (SNPs in rows, samples in columns) |
R2_thresh |
R2 threshold, default 0.8. |
Value
Filtered feature_snp_pairs that does not cotain highly correlated SNPs for single feature.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.