calculateTPM: Normalise counts matrix using transcripts per million (TPM)...
In kauralasoo/seqUtils:
Description
Usage
Arguments
Value
View source: R/matrix_munging.R
Description
Normalise counts matrix using transcripts per million (TPM) normalisation
Usage
1
2
calculateTPM(counts_matrix, lengths, selected_genes = NULL,
fragment_length = 250)
Arguments
counts_matrix
Matrix of read counts (genes in rows, samples in columns)
lengths
data frame with gene lengths (required columns: gene_id, length)
selected_genes
Subset of genes used to to calculate library size (default: NULL = use all genes)
fragment_length
Mean fragment length
Value
Read count matrix where entries have been TPM normalized.
kauralasoo/seqUtils documentation built on May 20, 2019, 7:42 a.m.
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Description Usage Arguments Value
View source: R/matrix_munging.R
Description
Normalise counts matrix using transcripts per million (TPM) normalisation
Usage
1 2 | calculateTPM(counts_matrix, lengths, selected_genes = NULL,
fragment_length = 250)
|
Arguments
counts_matrix |
Matrix of read counts (genes in rows, samples in columns) |
lengths |
data frame with gene lengths (required columns: gene_id, length) |
selected_genes |
Subset of genes used to to calculate library size (default: NULL = use all genes) |
fragment_length |
Mean fragment length |
Value
Read count matrix where entries have been TPM normalized.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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