Description Usage Arguments Value Author(s)
View source: R/qtl_makePlots.R
Plots are faceted by condition_name column in sample_metadata.
1 2 | plotEQTL(selected_gene_id, genotype_id, expression_matrix, genotype_matrix,
sample_metadata, gene_metadata)
|
selected_gene_id |
ID if the gene of interest. |
expression_matrix |
Matrix of normalised gene expression values (genes in rows, samples in columns). Column names correspond to sample_id in sample_metadata. |
genotype_matrix |
Matrix of genotypes (variants in rows, individuals in columns). Column names correspond to genotype_id in sample_metadata. |
sample_metadata |
data frame linking samples to genotypes (Required columns: sample_id, genotype_id, condition_name) |
gene_metadata |
data frame for linking gene ids to gene names. (Required columns: gene_id, gene_name) |
gentype_id |
ID of the variant of interest. |
ggplot2 object
Kaur Alasoo
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