matrixeqtlTestInteraction: Use MatrixEQTL to test interaction between genotype and two...
In kauralasoo/seqUtils:
Description
Usage
Arguments
Value
View source: R/qtl_test_interactions.R
Description
Use MatrixEQTL to test interaction between genotype and two conditions
Usage
1
2
matrixeqtlTestInteraction(conditions, gene_snp_pairs, expression_list,
genotype_list, covariate_names = NULL)
Arguments
conditions
Character vector containing the names of the two conditions
gene_snp_pairs
Data frame with two columns: gene_id, snp_id.
expression_list
List with expression data.
genotype_list
List with genotype data.
covariates_names
Names of the columns in the expression_list$sample_metadata table
that will be used as covariates for the matrixEQTL model.
Value
Tidy table with interaction testing results
kauralasoo/seqUtils documentation built on May 20, 2019, 7:42 a.m.
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Description Usage Arguments Value
View source: R/qtl_test_interactions.R
Description
Use MatrixEQTL to test interaction between genotype and two conditions
Usage
1 2 | matrixeqtlTestInteraction(conditions, gene_snp_pairs, expression_list,
genotype_list, covariate_names = NULL)
|
Arguments
conditions |
Character vector containing the names of the two conditions |
gene_snp_pairs |
Data frame with two columns: gene_id, snp_id. |
expression_list |
List with expression data. |
genotype_list |
List with genotype data. |
covariates_names |
Names of the columns in the expression_list$sample_metadata table that will be used as covariates for the matrixEQTL model. |
Value
Tidy table with interaction testing results
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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