loadCounts: Import featureCounts output table into R.
In kauralasoo/seqUtils:
Description
Usage
Arguments
Value
Author(s)
Description
Skips the first comment line.
Usage
1
2
loadCounts(sample_dir, sample_names, counts_suffix = ".counts.txt",
sub_dir = TRUE)
Arguments
sample_dir
Path to the directory containing the count files.
sample_names
Vector of sample names.
counts_suffix
Suffix of the counts file.
sub_dir
If TRUE, count files are nested in subfolders named after sample names, otherwise counts files
are directly in sample_dir.
Value
Counts matrix where the first two columns are gene_id and feature length.
Author(s)
Kaur Alasoo
kauralasoo/seqUtils documentation built on May 20, 2019, 7:42 a.m.
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Description Usage Arguments Value Author(s)
Description
Skips the first comment line.
Usage
1 2 | loadCounts(sample_dir, sample_names, counts_suffix = ".counts.txt",
sub_dir = TRUE)
|
Arguments
sample_dir |
Path to the directory containing the count files. |
sample_names |
Vector of sample names. |
counts_suffix |
Suffix of the counts file. |
sub_dir |
If TRUE, count files are nested in subfolders named after sample names, otherwise counts files are directly in sample_dir. |
Value
Counts matrix where the first two columns are gene_id and feature length.
Author(s)
Kaur Alasoo
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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