Description Usage Arguments Value
View source: R/qtl_test_interactions.R
Test for interaction between genotype and condition using ANOVA and lme4
1 2 | testInteractionLme4(gene_id, snp_id, trait_matrix, sample_metadata,
vcf_file, qtl_formula, interaction_formula, return_value = "ponly")
|
gene_id |
Tested gene id |
snp_id |
Tested SNP id |
trait_matrix |
expression or chromatin accessibility matrix |
sample_metadata |
data frame with sample metadata and covariates |
vcf_file |
VCF file from gdsToMatrix() function |
qtl_formula |
Formula for the model with just genotype and condition terms |
interaction_formula |
Formula for the model with interaction term betweeb genotype and condition |
Either a pvalue (if return_value == "ponly") or the full linear model object.
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