API for khughitt/EuPathDB
Provides access to pathogen annotation resources available on EuPathDB databases
| Global functions | |
|---|---|
| %:::% | Man page |
| %>% | Man page |
| EuPathDB | Man page |
| `%:::%` | Source code |
| build | Man page |
| build_dir | Man page |
| check_csv | Man page Source code |
| check_files | Man page Source code |
| check_orgdb_args | Source code |
| check_post_result | Man page Source code |
| check_rda | Man page Source code |
| check_s3 | Man page Source code |
| choose_successful_post | Man page Source code |
| clean_orgdb_args | Source code |
| clean_pkg | Man page Source code |
| copy_s3_file | Man page Source code |
| download_eupath_metadata | Man page Source code |
| download_eupath_tables | Source code |
| error | Man page Source code |
| expand_list_columns | Source code |
| extract_eupath_orthologs | Man page Source code |
| extract_gene_locations | Man page Source code |
| get_all_metadata | Man page Source code |
| get_eupath_annotation_columns | Source code |
| get_eupath_entry | Man page Source code |
| get_eupath_gene_types | Source code |
| get_eupath_pkgnames | Man page Source code |
| get_kegg_orgn | Man page Source code |
| get_metadata_filename | Man page Source code |
| get_rda_filename | Man page Source code |
| get_semantic_columns | Man page Source code |
| get_tags | Source code |
| get_versions | Man page Source code |
| info | Man page Source code |
| kegg_vector_to_df | Man page Source code |
| load_ah_annotations | Man page Source code |
| load_eupath_annotations | Man page Source code |
| load_eupath_go | Man page Source code |
| load_eupath_pkg | Man page Source code |
| load_kegg_annotations | Man page Source code |
| load_orgdb_annotations | Man page Source code |
| load_orgdb_go | Man page Source code |
| make_eupath_bsgenome | Man page Source code |
| make_eupath_granges | Man page Source code |
| make_eupath_organismdbi | Man page Source code |
| make_eupath_orgdb | Man page Source code |
| make_eupath_txdb | Man page Source code |
| make_get_query | Man page Source code |
| make_move_retlist | Source code |
| make_post_attempts | Man page Source code |
| make_taxon_names | Man page Source code |
| move_final_bsgenome_package | Source code |
| move_final_granges_package | Source code |
| move_final_organismdbi_package | Source code |
| move_final_orgdb_package | Source code |
| move_final_package | Man page |
| move_final_txdb_package | Source code |
| orgdb_from_ah | Man page Source code |
| post_eupath_annotations | Man page Source code |
| post_eupath_go_table | Man page Source code |
| post_eupath_goslim_table | Man page Source code |
| post_eupath_interpro_table | Man page Source code |
| post_eupath_linkout_table | Man page Source code |
| post_eupath_ortholog_table | Man page Source code |
| post_eupath_pathway_table | Man page Source code |
| post_eupath_pdb_table | Man page Source code |
| post_eupath_pubmed_table | Man page Source code |
| post_eupath_table | Man page Source code |
| prefix_map | Man page Source code |
| print.downloaded_metadata | Man page Source code |
| print.eupath_orgdb | Source code |
| query_s3_ah | Man page Source code |
| query_s3_file | Man page Source code |
| query_s3_granges | Man page Source code |
| query_s3_orgdb | Man page Source code |
| query_s3_txdb | Man page Source code |
| remove_eupath_nas | Man page Source code |
| search_na_taxon | Man page Source code |
| sm | Man page Source code |
| test_bsgenome | Source code |
| test_orgdb | Source code |
| test_pkgnames | Source code |
| test_txdb | Source code |
| warn | Man page Source code |
| write_eupath_metadata | Man page Source code |
| xref_ah_species | Man page Source code |
| xref_gidb_species | Man page Source code |
| xref_taxonomy_number | Man page Source code |
