feature_map.R

In kimberlyroche/codaDE: What the Package Does in One 'Title Case' Line

feature_map <- c("P" = "feature number",
                 "PARTIAL" = "totals expected to be partially informative (e.g. spike-in normalized)",
                 "TOTALS_C_FC" = "absolute fold change in mean totals (A vs. B)",
                 "TOTALS_C_D" = "absolute change in mean totals",
                 "TOTALS_C_MAX_D" = "max delta in totals",
                 "TOTALS_C_MED_D" = "median delta in totals",
                 "TOTALS_C_SD_D" = "std. dev. of in totals",
                 "CORR_RA_MED" = "median correlation of relative abundances",
                 "CORR_RA_SD" = "std. dev. of correlation of relative abundances",
                 "CORR_RA_SKEW" = "skew of correlation of relative abundances",
                 "CORR_LOG_MED" = "median correlation of log counts",
                 "CORR_LOG_SD" = "std. dev. of correlation of log counts",
                 "CORR_LOG_SKEW" = "skew of correlation of log counts",
                 "CORR_CLR_MED" = "median correlation of CLR features",
                 "CORR_CLR_SD" = "std. dev. of correlation of CLR features",
                 "CORR_CLR_SKEW" = "skew of correlation of CLR features",
                 "COMP_C_P0_A" = "percent features $=$ 0 in condition A",
                 "COMP_C_P0_B" = "percent features $=$ 0 in condition B",
                 "COMP_C_P1_A" = "percent features $=$ 1 in condition A",
                 "COMP_C_P1_B" = "percent features $=$ 1 in condition B",
                 "COMP_C_P5_A" = "percent features $\\leq$ 5 in condition A",
                 "COMP_C_P5_B" = "percent features $\\leq$ 5 in condition B",
                 "COMP_RA_P01_A" = "percent features $<$ 0.1\\% relative abundance in condition A",
                 "COMP_RA_P01_B" = "percent features $<$ 0.1\\% relative abundance in condition B",
                 "COMP_RA_P1_A" = "percent features $<$ 1\\% relative abundance in condition A",
                 "COMP_RA_P1_B" = "percent features $<$ 1\\% relative abundance in condition B",
                 "COMP_RA_P5_A" = "percent features $<$ 5\\% relative abundance in condition A",
                 "COMP_RA_P5_B" = "percent features $<$ 5\\% relative abundance in condition B",
                 "COMP_RA_MAX_A" = "max relative abundance in condition A",
                 "COMP_RA_MED_A" = "median relative abundance in condition A",
                 "COMP_RA_SD_A" = "std. dev. of relative abundance in condition A",
                 "COMP_RA_SKEW_A" = "skew of relative abundance in condition A",
                 "COMP_RA_MAX_B" = "max relative abundance in condition B",
                 "COMP_RA_MED_B" = "median relative abundance in condition B",
                 "COMP_RA_SD_B" = "std. dev. of relative abundance in condition B",
                 "COMP_RA_SKEW_B" = "skew of relative abundance in condition B",
                 "COMP_C_ENT_A" = "entropy in condition A",
                 "COMP_C_ENT_B" = "entropy in condition B",
                 "FW_RA_MAX_D" = "max change in relative abundance",
                 "FW_RA_MED_D" = "median change in relative abundance",
                 "FW_RA_SD_D" = "std. dev. of change in relative abundance",
                 "FW_RA_PPOS_D" = "percent features with + change in relative abundances",
                 "FW_RA_PNEG_D" = "percent features with - change in relative abundances",
                 "FW_RA_PFC05_D" = "percent features with $<$ 0.5 FC in relative abundance",
                 "FW_RA_PFC1_D" = "percent features with $<$ 1 FC in relative abundance",
                 "FW_RA_PFC2_D" = "percent features with $<$ 2 FC in relative abundance",
                 "FW_LOG_MAX_D" = "max change in log counts",
                 "FW_LOG_MED_D" = "median change in log counts",
                 "FW_LOG_SD_D" = "std. dev. of change in log counts",
                 "FW_LOG_PPOS_D" = "percent features with + change in log counts",
                 "FW_LOG_PNEG_D" = "percent features with - change in log counts",
                 "FW_LOG_PFC05_D" = "percent features with $<$ 0.5 FC in log counts",
                 "FW_LOG_PFC1_D" = "percent features with $<$ 1 FC in log counts",
                 "FW_LOG_PFC2_D" = "percent features with $<$ 2 FC in log counts",
                 "FW_CLR_MAX_D" = "max change in CLR",
                 "FW_CLR_MED_D" = "median change in CLR",
                 "FW_CLR_SD_D" = "std. dev. of change in CLR",
                 "FW_CLR_PPOS_D" = "percent features with + change in CLR",
                 "FW_CLR_PNEG_D" = "percent features with - change in CLR",
                 "FW_CLR_PFC05_D" = "percent features with $<$ 0.5 FC in CLR",
                 "FW_CLR_PFC1_D" = "percent features with $<$ 1 FC in CLR",
                 "FW_CLR_PFC2_D" = "percent features with $<$ 2 FC in CLR")