API for kimberlyroche/rulesoflife
| Global functions | |
|---|---|
| build_between_within_distributions | Man page Source code |
| calc_consensus_sign | Man page Source code |
| calc_se_decay | Man page Source code |
| calc_universality_score | Man page Source code |
| calc_universality_score_taxon | Man page Source code |
| check_dir | Man page Source code |
| convert_alr_Sigma_clr | Man page Source code |
| convert_series_clr | Man page Source code |
| downsample_counts | Man page Source code |
| filter_data | Man page Source code |
| filter_joint_zeros | Man page Source code |
| fit_GP | Man page Source code |
| generate_env_link | Man page Source code |
| generate_highcontrast_palette | Man page Source code Source code |
| generate_highcontrast_palette2 | Man page Source code |
| generate_innate_params | Man page Source code |
| generate_palette | Man page Source code |
| generate_scrambled_data | Man page Source code |
| generate_series | Man page Source code |
| get_Gamma | Man page Source code |
| get_Xi | Man page Source code |
| get_host_social_groups | Man page Source code |
| get_mean_clr_abundance | Man page Source code Source code |
| get_paired_trajectories | Man page Source code |
| get_predictions_host_list | Man page Source code |
| get_reference_hosts | Man page Source code |
| get_tax_label | Man page Source code |
| get_trajectory_df | Man page Source code |
| hello | Man page |
| load_data | Man page Source code |
| load_fit | Man page Source code |
| load_predictions | Man page Source code |
| load_scrambled_data | Man page Source code |
| order_rug_col_phylogenetic | Man page Source code |
| order_rug_cols_mean_abundance | Man page Source code |
| order_rug_row_baseline | Man page Source code |
| order_rug_row_diversity | Man page Source code |
| order_rug_row_group | Man page Source code |
| order_rug_row_pedigree | Man page Source code |
| percent_to_k | Man page Source code |
| plot_aligned_trajectories | Man page Source code |
| plot_clr_vs_diet | Man page Source code |
| plot_correlation_histogram | Man page Source code |
| plot_downsampling | Man page Source code |
| plot_enrichment | Man page Source code |
| plot_enrichment_old | Man page Source code |
| plot_gLV_bars | Man page Source code |
| plot_gLV_heatmap | Man page Source code |
| plot_gLV_lines | Man page Source code |
| plot_kernel_or_cov_matrix | Man page Source code |
| plot_rug | Man page Source code |
| plot_trajectories_top_pairs | Man page Source code |
| plot_trajectory | Man page Source code |
| predict_GP_mean | Man page Source code |
| predict_trajectory | Man page Source code |
| prune_data | Man page Source code |
| pull_Sigmas | Man page Source code |
| pull_series | Man page Source code |
| render_universal_pairs | Man page Source code |
| renumber_taxon | Source code |
| represented_taxa | Source code |
| rug_phylogenetic_distances | Man page Source code |
| sequence_distance | Man page Source code |
| simulate_scenario | Source code |
| simulate_series | Man page Source code |
| summarize_Sigmas | Man page Source code |
