Files in lambdamoses/SeuratBasics

Slimmed down version of Seurat

.github/pull_request_template.md CODE_OF_CONDUCT.md R/RcppExports.R R/clustering.R R/convenience.R R/data.R R/differential_expression.R R/dimensional_reduction.R R/generics.R R/objects.R R/preprocessing.R R/utilities.R R/visualization.R R/zzz.R man/AddMetaData.Rd man/AddModuleScore.Rd man/Assay-class.Rd man/Assays.Rd man/AugmentPlot.Rd man/AverageExpression.Rd man/BarcodeInflectionsPlot.Rd man/CalculateBarcodeInflections.Rd man/CaseMatch.Rd man/CellCycleScoring.Rd man/CellScatter.Rd man/CellSelector.Rd man/Cells.Rd man/CellsByIdentities.Rd man/CollapseEmbeddingOutliers.Rd man/CollapseSpeciesExpressionMatrix.Rd man/CombinePlots.Rd man/Command.Rd man/CreateAssayObject.Rd man/CreateDimReducObject.Rd man/CreateSeuratObject.Rd man/CustomDistance.Rd man/CustomPalette.Rd man/DefaultAssay.Rd man/DietSeurat.Rd man/DimHeatmap.Rd man/DimPlot.Rd man/DimReduc-class.Rd man/DiscretePalette.Rd man/DoHeatmap.Rd man/DotPlot.Rd man/ElbowPlot.Rd man/Embeddings.Rd man/ExpMean.Rd man/ExpSD.Rd man/ExpVar.Rd man/FeaturePlot.Rd man/FeatureScatter.Rd man/FetchData.Rd man/FindAllMarkers.Rd man/FindClusters.Rd man/FindMarkers.Rd man/FindNeighbors.Rd man/FindVariableFeatures.Rd man/GetAssay.Rd man/GetAssayData.Rd man/GetResidual.Rd man/Graph-class.Rd man/HTODemux.Rd man/HTOHeatmap.Rd man/HVFInfo.Rd man/Idents.Rd man/IsGlobal.Rd man/JS.Rd man/JackStraw.Rd man/JackStrawData-class.Rd man/JackStrawPlot.Rd man/Key.Rd man/LabelClusters.Rd man/LabelPoints.Rd man/Loadings.Rd man/LogNormalize.Rd man/LogSeuratCommand.Rd man/LogVMR.Rd man/MULTIseqDemux.Rd man/MetaFeature.Rd man/MinMax.Rd man/Misc.Rd man/NormalizeData.Rd man/OldWhichCells.Rd man/PCASigGenes.Rd man/PercentageFeatureSet.Rd man/PolyDimPlot.Rd man/PolyFeaturePlot.Rd man/Project.Rd man/ProjectDim.Rd man/Read10X.Rd man/Read10X_h5.Rd man/ReadAlevin.Rd man/ReadAlevinCsv.Rd man/Reductions.Rd man/RegroupIdents.Rd man/RelativeCounts.Rd man/RenameAssays.Rd man/RenameCells.Rd man/RidgePlot.Rd man/RowMergeSparseMatrices.Rd man/RunPCA.Rd man/RunTSNE.Rd man/RunUMAP.Rd man/SCTransform.Rd man/SampleUMI.Rd man/ScaleData.Rd man/ScoreJackStraw.Rd man/SetAssayData.Rd man/Seurat-class.Rd man/SeuratBasics-package.Rd man/SeuratCommand-class.Rd man/SeuratTheme.Rd man/SplitObject.Rd man/Stdev.Rd man/SubsetByBarcodeInflections.Rd man/SubsetData.Rd man/Tool.Rd man/TopCells.Rd man/TopFeatures.Rd man/VariableFeaturePlot.Rd man/VariableFeatures.Rd man/VizDimLoadings.Rd man/VlnPlot.Rd man/WhichCells.Rd man/as.CellDataSet.Rd man/as.Graph.Rd man/as.Seurat.Rd man/as.SingleCellExperiment.Rd man/as.list.SeuratCommand.Rd man/as.loom.Rd man/as.sparse.Rd man/cc.genes.Rd man/cc.genes.updated.2019.Rd man/h5ad.Rd man/merge.Seurat.Rd man/oldseurat-class.Rd man/pbmc_small.Rd man/print.DimReduc.Rd man/subset.Seurat.Rd tests/testthat.R tests/testthat/test_data_manipulation.R tests/testthat/test_differential_expression.R tests/testthat/test_dimensional_reduction.R tests/testthat/test_load_10X.R tests/testthat/test_modularity_optimizer.R tests/testthat/test_objects.R tests/testthat/test_preprocessing.R tests/testthat/test_utilities.R tests/testthat/test_visualization.R