compute.all.self.dimers: Self dimers

In matdoering/openPrimeR: Multiplex PCR Primer Design and Analysis

Self dimers

Description

Computes all possible self dimers for the primers in the input data frame.

Usage

compute.all.self.dimers(
  primer.df,
  primer_conc,
  na_salt_conc,
  mg_salt_conc,
  k_salt_conc,
  tris_salt_conc,
  annealing.temp,
  for.shiny = FALSE,
  no.structures = FALSE
)

Arguments

primer.df	Input primer data frame.
primer_conc	Primer concentration.
na_salt_conc	Sodium ion concentration.
mg_salt_conc	Magensium ion concentration.
k_salt_conc	Potassium ion concentration.
tris_salt_conc	Tris buffer concentration.
annealing.temp	The PCR annealing temperature.
for.shiny	Whether the output is to be formatted for HTML.
no.structures	Whether dimerization structures shall be outputted.

Value

Data frame with thermodynamic information on all self dimers.

matdoering/openPrimeR documentation built on July 4, 2025, 3:59 a.m.