compute.dimer.matrix: Dimerization matrix
In matdoering/openPrimeR: Multiplex PCR Primer Design and Analysis
View source: R/con_dimerization.R
compute.dimer.matrix R Documentation
Dimerization matrix
Description
Computes a matrix indicating all dimerizing primers according to a DeltaG cutoff.
Usage
compute.dimer.matrix(G, deltaG.cutoff = -7)
Arguments
G
Matrix with free energies of all considered primer pairs.
deltaG.cutoff
Primers with free energies below the cutoff are considered dimerizing.
Value
Binary matrix with dimerization events according to the deltaG.cutoff.
Contains '1' if primers (i,j) dimerize and '0' else.
matdoering/openPrimeR documentation built on July 4, 2025, 3:59 a.m.
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View source: R/con_dimerization.R
| compute.dimer.matrix | R Documentation |
Dimerization matrix
Description
Computes a matrix indicating all dimerizing primers according to a DeltaG cutoff.
Usage
compute.dimer.matrix(G, deltaG.cutoff = -7)
Arguments
G |
Matrix with free energies of all considered primer pairs. |
deltaG.cutoff |
Primers with free energies below the cutoff are considered dimerizing. |
Value
Binary matrix with dimerization events according to the deltaG.cutoff.
Contains '1' if primers (i,j) dimerize and '0' else.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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