compute.structure.vienna: Computation of Secondary Structures with ViennaRNA.

In matdoering/openPrimeR: Multiplex PCR Primer Design and Analysis

Computation of Secondary Structures with ViennaRNA.

Description

Computes secondary structures using ViennaRNA.

Usage

compute.structure.vienna(
  seqs,
  annealing.temperature,
  folding.constraints = NULL,
  id = ""
)

Arguments

seqs	The input sequences for which structures shall be computed.
annealing.temperature	The temperature in degree Celsius at which to compute secondary structures.
folding.constraints	Character vector specifying the folding conditions for every input sequence. For example the constraint xxxxxx... would forbid folding in the first 6 bases and allow folding in the last 3 bases.
id	An identifier for storing the files
constraints	If provide

Value

A data frame with secondary structures.

matdoering/openPrimeR documentation built on July 4, 2025, 3:59 a.m.