compute.template.secondary.structures: Template Secondary Structures

In matdoering/openPrimeR: Multiplex PCR Primer Design and Analysis

Template Secondary Structures

Description

Computes template secondary structures.

Usage

compute.template.secondary.structures(
  template.df,
  annealing.temperature,
  regions = NULL,
  constraints = NULL
)

Arguments

template.df	Template data frame.
annealing.temperature	Temperature [C] at which to compute secondary structures.
regions	List containing the positional intervals for which the template secondary structure should be computed.
constraints	String giving secondary structure constraints. For example xxxxxx... would forbid folding in the first 6 bases of a template with length 9 and allow folding in its last 3 bases.

Value

Data frame with info on template secondary structures.

matdoering/openPrimeR documentation built on July 4, 2025, 3:59 a.m.