detect.gap.columns: Identification of Gappy Columns in Alignments.
In matdoering/openPrimeR: Multiplex PCR Primer Design and Analysis
detect.gap.columns R Documentation
Identification of Gappy Columns in Alignments.
Description
Identification of Gappy Columns in Alignments.
Usage
detect.gap.columns(bins, gap.cutoff = 0.95, gap.char = "-")
Arguments
bins
A list of DNABin alignments.
gap.cutoff
The required percentage of gaps
for consideration as a gap column.
gap.char
The gap character in the alignments.
Value
A list with indices giving the gap columns
for every alignment in bins.
matdoering/openPrimeR documentation built on July 4, 2025, 3:59 a.m.
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| detect.gap.columns | R Documentation |
Identification of Gappy Columns in Alignments.
Description
Identification of Gappy Columns in Alignments.
Usage
detect.gap.columns(bins, gap.cutoff = 0.95, gap.char = "-")
Arguments
bins |
A list of |
gap.cutoff |
The required percentage of gaps for consideration as a gap column. |
gap.char |
The gap character in the alignments. |
Value
A list with indices giving the gap columns
for every alignment in bins.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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