estimate.cvg: Estimation of Primer Coverage.
In matdoering/openPrimeR: Multiplex PCR Primer Design and Analysis
estimate.cvg R Documentation
Estimation of Primer Coverage.
Description
Estimates the possible coverage of primers using
probes of size k and only considering perfect
matches without consideration of ambiguities.
Usage
estimate.cvg(lex.df, k = 18, mode.directionality, sample = "")
Arguments
k
A numeric giving the size of the primers.
mode.directionality
Estimation of coverage for forward/reverse/both?
sample
An optional identifier for the sample.
seqs
A character vector of sequences to evaluate coverage for.
Value
A list with entries fw and rev giving
data frames for forward/reverse binding.
matdoering/openPrimeR documentation built on July 4, 2025, 3:59 a.m.
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| estimate.cvg | R Documentation |
Estimation of Primer Coverage.
Description
Estimates the possible coverage of primers using
probes of size k and only considering perfect
matches without consideration of ambiguities.
Usage
estimate.cvg(lex.df, k = 18, mode.directionality, sample = "")
Arguments
k |
A numeric giving the size of the primers. |
mode.directionality |
Estimation of coverage for forward/reverse/both? |
sample |
An optional identifier for the sample. |
seqs |
A character vector of sequences to evaluate coverage for. |
Value
A list with entries fw and rev giving
data frames for forward/reverse binding.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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