get.3prime.mismatch.pos: Identification of 3' Mismatches.

View source: R/con_primer_coverage.R

get.3prime.mismatch.posR Documentation

Identification of 3' Mismatches.

Description

Computes the lastmost position of a 3' mismatches of a primer with a template.

Usage

get.3prime.mismatch.pos(primers, mismatches)

Arguments

primers

Primer sequence strings.

mismatches

Comma-separated strings containing the primer mismatch positions.

Value

The closest position of a mismatch relative to the 3' end of the primer. Here, 1 indicates the terminal position, 2 the penultimate position, and so on. No mismatch is indicated by an infinite value.


matdoering/openPrimeR documentation built on July 4, 2025, 3:59 a.m.