get.coverage.matrix: Coverage Matrix
In matdoering/openPrimeR: Multiplex PCR Primer Design and Analysis
View source: R/optimization_ILP.R
get.coverage.matrix R Documentation
Coverage Matrix
Description
Constructs a coverage matrix where rows indicate templates and columns indicate primers.
Usage
get.coverage.matrix(primer.df, template.df, constraints = NULL)
Arguments
primer.df
Primer data frame.
template.df
Template data frame.
constraints
A character vector of coverage constraints
to be used as entries for the coverage matrix instead of the 0/1 encoding.
At its default setting (NULL), the 0/1 encoding is used.
Details
Entry (i,j) in the matrix is equal to 1 if primer j covers template i and otherwise 0.
Value
The binary coverage matrix.
matdoering/openPrimeR documentation built on July 4, 2025, 3:59 a.m.
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View source: R/optimization_ILP.R
| get.coverage.matrix | R Documentation |
Coverage Matrix
Description
Constructs a coverage matrix where rows indicate templates and columns indicate primers.
Usage
get.coverage.matrix(primer.df, template.df, constraints = NULL)
Arguments
primer.df |
Primer data frame. |
template.df |
Template data frame. |
constraints |
A character vector of coverage constraints
to be used as entries for the coverage matrix instead of the 0/1 encoding.
At its default setting ( |
Details
Entry (i,j) in the matrix is equal to 1 if primer j covers template i and otherwise 0.
Value
The binary coverage matrix.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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