get_max_set_coverage: Determination of Maximal Coverage.

In matdoering/openPrimeR: Multiplex PCR Primer Design and Analysis

Determination of Maximal Coverage.

Description

Determines the maximal coverage ratio of a set of primers for primer subsets valid for a certain temperature range. a certain melting temperature range.

Usage

get_max_set_coverage(
  primer.df,
  template.df,
  Tm.brackets,
  settings,
  mode.directionality,
  max.only = TRUE
)

Arguments

primer.df	An object of class Primers.
template.df	An objectc of class Templates.
Tm.brackets	A data frame with temperature information.
settings	A DesignSettings object.
mode.directionality	The direction of the primers.
max.only	Whether only the maxium coverage shall be returned. If max.only is FALSE, the coverage ratios of all melting temperature sets according to Tm.brackets are returned.

Value

The maximal coverage ratio of a primer set if max.only is TRUE or the coverages of all melting temperature seets if max.only is FALSE.

matdoering/openPrimeR documentation built on July 4, 2025, 3:59 a.m.