my.disambiguate: Disambiguation of Sequences.

View source: R/ambiguity.R

my.disambiguateR Documentation

Disambiguation of Sequences.

Description

Disambiguates the input sequences, but does not disambiguate highly generate sequences.

Usage

my.disambiguate(template.seqs, gap.char = "-", degen.cutoff = 2^10)

Arguments

template.seqs

A DNAStringSet object with sequences to disambiguate.

gap.char

The character indicating gaps in alignments.

degen.cutoff

The maximal degeneration of sequences to be disambiguated.

Value

A DNAStringSetList object with disambiguated sequences.


matdoering/openPrimeR documentation built on July 4, 2025, 3:59 a.m.