plot.all.cvg.info: Plots Coverage Information

In matdoering/openPrimeR: Multiplex PCR Primer Design and Analysis

Plots Coverage Information

Description

Visualizes all coverage-related data.

Usage

## S3 method for class 'all.cvg.info'
plot(
  sample,
  results.loc,
  primers,
  template.df,
  mode.directionality,
  identifier = c("filtering", "optimized"),
  primer_conc,
  na_salt_conc,
  mg_salt_conc,
  k_salt_conc,
  tris_salt_conc,
  settings,
  required.cvg,
  used.settings = NULL
)

Arguments

sample	Primer design run identifier.
results.loc	Location where the filtering results are stored.
primers	Primer data frame.
template.df	Template data frame.
mode.directionality	Design direction.
identifier	Identifies whether filtering or optimization info should be displayed.
primer_conc	Primer concentration.
na_salt_conc	Sodium ion concentration.
mg_salt_conc	Magensium ion concentration.
k_salt_conc	Potassium ion concentration.
tris_salt_conc	Tris ion concentration.
settings	The DesignSettings object.
required.cvg	The required coverage.
used.settings	A list containing DesignSettings objects for the 'fw' and 'rev' optimization.

Value

Writes plots to files.

matdoering/openPrimeR documentation built on July 4, 2025, 3:59 a.m.