read_templates_multiple: Input of Multiple Templates.

In matdoering/openPrimeR: Multiplex PCR Primer Design and Analysis

Input of Multiple Templates.

Description

Reads multiple template CSV/FASTA files.

Usage

read_templates_multiple(
  filenames,
  hdr.structure = NULL,
  delim = NULL,
  id.column = NULL,
  rm.keywords = NULL,
  remove.duplicates = FALSE,
  fw.region = c(1, 30),
  rev.region = c(1, 30),
  gap.character = "-",
  run = NULL
)

Arguments

filenames	Names of FASTA/CSV files containing template data.
hdr.structure	A character vector describing the information contained in the FASTA headers. In case that the headers of fasta.file contain template group information, please include the keyword "GROUP" in hdr.structure.
delim	Delimiter for the information in the FASTA headers.
id.column	Field in the header to be used as the identifier.
rm.keywords	A vector of keywords that are used to remove templates whose headers contain any of the keywords.
remove.duplicates	Whether duplicate sequence shall be removed.
fw.region	The positional interval from the template 5' end specifying the binding sites for forward primers.
rev.region	The positional interval from the template 3' end specifying the binding sites for reverse primers.
gap.character	The character in the input file representing gaps. Gaps are automatically removed upon input.
run	An identifier for the template sequences.

Value

A list containing objects of class Templates.

matdoering/openPrimeR documentation built on July 4, 2025, 3:59 a.m.