restriction_ali: Identification of Badly Fitting Regions.
In matdoering/openPrimeR: Multiplex PCR Primer Design and Analysis
restriction_ali R Documentation
Identification of Badly Fitting Regions.
Description
Identify regions in the templates where the primers are
not very complementary. These regions indicate possible
restriction enzyme adapters.
Usage
restriction_ali(primer.seqs, template.seqs, search.hits)
Arguments
primer.seqs
Primer sequences.
template.seqs
Template sequences.
search.hits
Template substrings that agree well
with the input primers.
Value
A list with putative restriction sites for every primer.
matdoering/openPrimeR documentation built on July 4, 2025, 3:59 a.m.
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| restriction_ali | R Documentation |
Identification of Badly Fitting Regions.
Description
Identify regions in the templates where the primers are not very complementary. These regions indicate possible restriction enzyme adapters.
Usage
restriction_ali(primer.seqs, template.seqs, search.hits)
Arguments
primer.seqs |
Primer sequences. |
template.seqs |
Template sequences. |
search.hits |
Template substrings that agree well with the input primers. |
Value
A list with putative restriction sites for every primer.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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