solve.ILP: Solve an ILP

In matdoering/openPrimeR: Multiplex PCR Primer Design and Analysis

Solve an ILP

Description

Constructs and solves an ILP and outputs a list with the reuslts.

Usage

## S3 method for class 'ILP'
solve(
  cur.D,
  cur.G,
  cur.settings,
  cur.cvg.matrix,
  time.limit,
  required.cvg,
  primer.df,
  template.df
)

Arguments

cur.D	Binary dimerization matrix.
cur.G	Free energy matrix for cross-dimerization.
cur.settings	Current DesignSettings object.
cur.cvg.matrix	Binary coverage matrix.
time.limit	Time limit for solving the ILP in seconds.
required.cvg	The target coverage of the designed primer set.
primer.df	A Primers object.
template.df	A Templates object.
deltaG.cutoff	Cutoff for dimerization free energy.
deltaG.limit	Relaxation limit for free energy cutoff.

Value

List with ILP solution data.

matdoering/openPrimeR documentation built on July 4, 2025, 3:59 a.m.