update.binding.ranges.by.conservation: Updates Binding Region in the Alignment by conservation.

In matdoering/openPrimeR: Multiplex PCR Primer Design and Analysis

Updates Binding Region in the Alignment by conservation.

Description

Updates Binding Region in the Alignment by conservation.

Usage

## S3 method for class 'binding.ranges.by.conservation'
update(
  template.df,
  bins,
  entropy.df,
  gap.char = "-",
  win.len = 30,
  direction = c("fw", "rev")
)

Arguments

template.df	A Templates object.
bins	A list with DNAbin alignments, one for each group of template sequences.
entropy.df	A data frame with entropy information.
gap.char	The gap character for alignments.
win.len	The desired length of the new binding region.
direction	The direction for which the binding range shall be adjusted.

Value

A Templates object with modified binding regions.

matdoering/openPrimeR documentation built on July 4, 2025, 3:59 a.m.