Files in mevers/RNAModR
Functional Analysis of RNA Modifications
.DS_Store
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/IO.R
R/buildTxMethods.R
R/classes.R
R/extdata.R
R/glm.R
R/helper.R
R/methods.R
R/model.stan
R/plot.R
R/unused.R
README.md
inst/extdata/HITSCLIP_eIF4A3_Sauliere2012_hg38.bed
inst/extdata/MeRIPseq_m1A_Dominissini2016_hg38.bed
inst/extdata/PARCLIP_AGO1234_Hafner2010_hg38.bed
inst/extdata/PARCLIP_YTHDF2_Wang2014_hg38.bed
inst/extdata/PARCLIP_eIF3_Lee2015_hg38.bed
inst/extdata/PARCLIP_eIF3_Meyer2015_hg38.bed
inst/extdata/PseudoU_Schwartz2014_Li2015_hg38.bed
inst/extdata/TargetScan_miRNAtargets_hg38.bed
inst/extdata/bsRNAseq_m5C_Squires2012_hg38.bed
inst/extdata/miCLIP_m6A_Linder2015_hg38.bed
m6A_spatial_enrichment.png
man/AddAlpha.Rd
man/BuildTx.Rd
man/CheckClass.Rd
man/CheckClassTxLocConsistency.Rd
man/CheckClassTxLocRef.Rd
man/CheckPkgDependencies.Rd
man/CollapseTxBySec.Rd
man/Datasets.Rd
man/DedupeBasedOnNearestRef.Rd
man/DownsampleTxLoc.Rd
man/EstimateCIFromBS.Rd
man/FilterTxLoc.Rd
man/GenerateNull.Rd
man/GetColPal.Rd
man/GetDistNearestStartStop.Rd
man/GetEEJunct.Rd
man/GetGC.Rd
man/GetGeneIds.Rd
man/GetId.Rd
man/GetLoci.Rd
man/GetMotifLoc.Rd
man/GetNumberOfLoci.Rd
man/GetRef.Rd
man/GetRegions.Rd
man/GetRelDistNearest.Rd
man/GetSplicingSites.Rd
man/GetTxBySec.Rd
man/GetTxDb.Rd
man/GetTxRegionCoordinates.Rd
man/GetTxSeq.Rd
man/GetVersion.Rd
man/IsEmptyChar.Rd
man/LoadRefTx.Rd
man/MatchFlank.Rd
man/PerformSanityCheck.Rd
man/PlotAbundance.generic.Rd
man/PlotEnrichment.Generic.Rd
man/PlotGC.Rd
man/PlotOverlap.Rd
man/PlotRelDistDistribution.Rd
man/PlotRelDistEnrichment.Rd
man/PlotRelStartStopEnrichment.Rd
man/PlotSectionDistribution.Rd
man/PlotSectionEnrichment.Rd
man/PlotSeqLogo.Rd
man/PlotSpatialDistribution.Rd
man/PlotSpatialEnrichment.Rd
man/PlotSpatialRatio.Rd
man/ReadBED.Rd
man/SafeLoad.Rd
man/SmartMap.Rd
man/SmartMap.ToTx.Rd
man/SubsampleTxLoc.Rd
man/TxLoc2GRangesList.Rd
man/Unfactor.Rd
man/WriteBED.Rd
man/WriteCSV.Rd
man/txLoc-accessors.Rd
man/txLoc-class.Rd
tests/testthat.R
tests/testthat/test_ReadBed.R
vignettes/.gitignore
vignettes/Example-analysis.Rmd
vignettes/RNAModR_0.2.3.pdf
