TxLoc2GRangesList: Convert a 'txLoc' object to a 'GRangesList' object.

Description Usage Arguments Details Value Author(s)

View source: R/helper.R

Description

Convert a txLoc object to a GRangesList object. See 'Details'.

Usage

1
TxLoc2GRangesList(txLoc, method = c("tx_region", "genome"))

Arguments

txLoc

A txLoc object.

method

A character string; specifies whether coordinates are genome (method = "genome") or transcriptome coordinates (method = "tx_region").

Details

The function converts a txLoc to a GRangesList object. Coordinates can be either genomic coordinates (method = "genome") or transcript region coordinates (method = "tx_region").

Value

A list of GRanges objects. See 'Details'.

Author(s)

Maurits Evers, maurits.evers@anu.edu.au


mevers/RNAModR documentation built on Nov. 17, 2019, 9:11 a.m.